VIPOR_SEQ_DOC_FAM

Description:

This table stores the relatives' (family members') sequencing documents used by a genomic variant interpretation pipeline run. Each row is one family member's sequencing document — for example, the mother's, father's, or a sibling's — referenced on the run for trio or family analysis, along with the document's column name, sample type, and affected status. It parallels the VIPOR_SEQ_DOC table, which stores the patient's own (proband's) sequencing documents.

Primary Key

Column Name	Ordinal Position
VIPOR_EXEC_ID	1
CONTACT_DATE_REAL	2
LINE	3

Column Information

	Name	Type	Discontinued?
1	VIPOR_EXEC_ID	NUMERIC	No
	The unique identifier (.1 item) for the Variant Interpretation Pipeline Orchestrator (VIPOr) record.
2	CONTACT_DATE_REAL	FLOAT	No
	A unique contact date in decimal format. The integer portion of the number indicates the date of contact. The digits after the decimal distinguish different contacts on the same date and are unique for each contact on that date. For example, .00 is the first/only contact, .01 is the second contact, etc.
3	LINE	INTEGER	No
	The line number for the information associated with this contact. Multiple pieces of information can be associated with this contact.
4	SEQ_DOC_ID	NUMERIC	No
	The Genomic Sequencing Document (PDS) associated with a family member of the proband for this Variant Interpretation Pipeline Orchestrator (VIPOr) execution.
5	SEQ_DOC_COL_NAME	VARCHAR	No
	The name of the column within the sequencing document that contains the associated sequencing data. This name is required to identify the correct set of sequencing data within the document. The list of valid possible values can be found in item PDS 1100 for the document.
6	ORD_SEQ_DOC_SAMPLE_TYP_C_NAME	NUMERIC	No
	The sample type of the sequencing data within the column of the sequencing document. May contain organization-specific values: No Category Entries: Germline Maternal Paternal Sibling Relative Tumor Paired Tumor/Normal Normal Pending update
7	SEQ_AFFECTED_STATUS_C_NAME	NUMERIC	No
	Whether the sample on this sequencing document line is from an affected or unaffected individual. Used by the variant interpretation pipeline to filter variants for trio and family analysis. May contain organization-specific values: No Category Entries: Yes No Unknown